Welcome to NL-BIOMERO’s documentation!
NL-BIOMERO is a containerized deployment of OMERO with BIOMERO for bioimage analysis workflows, featuring automated data import, workflow management, and enhanced web interfaces.
This platform provides a complete solution for bioimage data management and analysis, combining:
OMERO - Image data management platform
BIOMERO.analyzer - High-performance computing integration
BIOMERO.importer - Automated data import workflows
BIOMERO.scripts - HPC workflow execution scripts
OMERO.biomero - Modern web interfaces for data import and analysis
OMERO.forms - Flexible form-based interfaces for metadata annotation
Metabase - Analytics and visualization dashboards
Docker Compose - Easy deployment and scaling scenarios
Note
Deployment, migration, and backup procedures shown in this documentation are examples for inspiration. They are not prescriptive recommendations and may not address all environments. Always adapt and validate them for your organization’s security, compliance, and operational requirements.
Getting Started
Choose your deployment scenario:
New Installation: Start with Deployment Guide for fresh deployments
Existing OMERO: See sysadmin/hybrid-deployment for integration options
Development: Use developer/contributing for local development setup
System Administration
Quick Links
Deployment Guide - Deployment scenarios and setup
Backup and Restore - Backup and restore procedures
Getting Started - First steps with NL-BIOMERO
Architecture Overview - Technical architecture overview
Note
This documentation covers containerized deployment scenarios. For non-containerized installations, refer to the individual component documentation.